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PCR酶在扩增过程中会出错嘛?

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请问下日常用的PCR酶,比如Taq酶,Pfu酶在扩增的过程中会引入错误突变嘛,导致下游的序列是错误的?有什么办法能够检测呢?这个对后续的细胞或基因质量产品开发非常重要呢。

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yesgo  管理员  发表于 2023-5-24 21:59:44 | 显示全部楼层
在文献“Fidelity of DNA polymerases in the detection of intraindividual variation of mitochondrial DNA”中提到, Taq扩增酶的错误率是在2x10-4--5之间,而Q5保真酶大概是10-6级别。具体可以看下这篇文献。


The fidelity of a DNA polymerase is usually expressed by the mean error rate per base per duplication (Keohavong and Thilly 1989). Taq-pol has an error rate between 2 × 10−4 (Saiki et al. 1988; Keohavong and Thilly 1989) and 2 × 10−5 (Eckert and Kunkel 1990; McInerney et al. 2014). Proofreading activity of the high-fidelity polymerases drops error rates to 10−6 or even lower (Cline 1996; Li et al. 2006; McInerney et al. 2014). Despite the higher error rate of Taq-pol compared to high-fidelity polymerases, the frequency of each error in the population of amplified molecules is still considered low (Lin et al. 2002). However, these errors may hinder the analysis of coamplification of different sequences (Pascual et al. 1994; Bracho et al. 1998), as in studies of heteroplasmy.
yesgo  管理员  发表于 2023-5-24 22:04:00 | 显示全部楼层
yesgo 发表于 2023-5-24 21:59
在文献“Fidelity of DNA polymerases in the detection of intraindividual variation of mitochondrial D ...

如果要检测非常低频的PCR酶引入的突变,可以考虑使用PacBio Sequel iie等平台测序解决。这篇文章“Base modifications affecting RNA polymerase and reverse transcriptase fidelity”中就提到了利用PacBio平台测序不同逆转录酶对不同修饰的碱基的扩增错误率,这个对于当前mRNA序列体外转录生产的质控非常重要,值得参考学习。q(≧▽≦q)*^____^*
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